STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22167.1Putative transposase; Truncated CDS. (344 aa)    
Predicted Functional Partners:
EFL28113.1
ISSoc3, OrfA transposase.
 
    0.788
EFL24353.1
2-isopropylmalate synthase.
  
     0.774
EFL23930.1
ISSoc3, OrfA transposase; Unextendable partial coding region.
 
    0.772
EFL27337.1
Transposase.
  
     0.654
EFL21958.1
Conserved hypothetical protein.
    
   0.568
EFL22166.1
Xre family toxin-antitoxin system, antitoxin component.
 
     0.562
EFL22164.1
Putative toxin-antitoxin system, toxin component; Overlaps another CDS with the same product name.
       0.503
EFL22165.1
Putative toxin-antitoxin system, toxin component; Overlaps another CDS with the same product name.
       0.503
EFL20441.1
ISMsm5, transposase; Unextendable partial coding region.
  
 
   0.417
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.