STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22190.1Galactocerebrosidase. (774 aa)    
Predicted Functional Partners:
EFL22189.1
alpha-L-fucosidase.
 
     0.875
EFL25892.1
Putative endo-1,4-beta-glucanase.
  
  
  0.768
EFL22186.1
Conserved hypothetical protein.
 
   
 0.696
EFL20452.1
Flavin-containing superfamily amine oxidase.
  
    0.692
EFL26009.1
IolB protein.
   
    0.657
EFL22191.1
Putative ricin-type beta-trefoil lectin domain protein.
 
    
0.628
EFL28289.1
Arabinogalactan endo-1,4-beta-galactosidase (Endo-1,4-beta-galactanase) (Galactanase).
  
  
 0.597
EFL23878.1
LigA protein.
  
     0.559
EFL20953.1
crp/Fnr family transcriptional regulator.
     
  0.516
EFL22183.1
alpha-N-arabinofuranosidase (Arabinosidase).
     0.504
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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