STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22218.1PE-PGRS family protein. (750 aa)    
Predicted Functional Partners:
EFL22217.1
LigA protein.
       0.791
EFL22219.1
Conserved hypothetical protein.
       0.777
EFL23057.1
Conserved hypothetical protein.
  
 
 0.645
EFL22832.1
Putative integral membrane protein.
  
    0.466
EFL22596.1
AP endonuclease, family 2.
   
    0.459
EFL24998.1
Secretion protein Snm4.
   
    0.445
EFL29214.1
Secretion protein Snm4.
   
    0.445
EFL21424.1
Conserved hypothetical protein.
   
 
 0.422
EFL22937.1
Smc; Overlaps another CDS with the same product name.
   
 
 0.422
EFL22938.1
Smc; Overlaps another CDS with the same product name.
   
 
 0.422
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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