Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL22233.1Membrane protein. (267 aa)    
Predicted Functional Partners:
EFL22232.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.994
EFL25255.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.946
EFL22234.1
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
     0.880
EFL20299.1
Hypothetical protein.
  
 
 0.841
EFL22231.1
Probable methyltransferase.
       0.566
EFL22235.1
Conserved hypothetical protein.
 
     0.514
EFL22238.1
Amine oxidase, flavin-containing; Truncated CDS.
 
   
 0.508
EFL24853.1
Helix-loop-helix' dimerization domain signature protein; Truncated CDS; unextendable partial coding region.
 
     0.476
EFL27301.1
Conserved hypothetical protein.
 
     0.459
EFL27299.1
Putative transporter, Ni2+-Co2+ transporter (NiCoT) family; Unextendable partial coding region.
 
     0.431
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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