STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22234.1Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family. (445 aa)    
Predicted Functional Partners:
EFL22232.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   
 0.898
EFL22233.1
Membrane protein.
 
     0.888
EFL28342.1
Deoxyribodipyrimidine photolyase.
 
   
 0.819
EFL26112.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.744
ybeY
Putative metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.707
EFL24853.1
Helix-loop-helix' dimerization domain signature protein; Truncated CDS; unextendable partial coding region.
 
     0.690
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
    
   0.639
EFL21788.1
Putative ABC transporter, ATP-binding protein.
  
 
 
 0.618
EFL23407.1
Thiazole biosynthesis adenylyltransferase ThiF.
    
 
 0.583
EFL21964.1
Putative helix-turn-helix domain protein.
   
   0.573
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.