STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22316.1RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family. (292 aa)    
Predicted Functional Partners:
EFL22809.1
Sensor histidine kinase/response regulator.
  
  
 0.846
EFL23336.1
Anti-sigma factor (match).
 
 
 0.776
EFL24308.1
Putative AmfC protein.
    
 
 0.763
EFL27807.1
Putative integral membrane sensor protein.
 
 
 0.716
EFL22288.1
Putative membrane protein; Truncated CDS; unextendable partial coding region.
 
 
 0.714
EFL24983.1
anti-sigma-B factor antagonist (Anti-anti-sigma-B factor); Belongs to the anti-sigma-factor antagonist family.
 
 
 0.714
EFL27697.1
Putative integral membrane sensor protein.
 
 
 0.712
EFL20519.1
Putative membrane protein.
 
 
 0.711
EFL20622.1
Putative integral membrane sensor protein.
 
 
 0.707
EFL21338.1
Putative membrane protein.
 
 
 0.707
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.