STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22436.1Putative DNA-binding protein. (199 aa)    
Predicted Functional Partners:
EFL27833.1
DNA-binding protein.
  
 
  0.787
EFL22437.1
Hypothetical protein.
       0.773
EFL22435.1
Guanyl-specific ribonuclease Sa3 (RNase Sa3).
       0.751
EFL20490.1
GNAT family acetyltransferase.
    
  0.597
EFL21385.1
Mannose-1-phosphate guanyltransferase.
    
  0.595
EFL22638.1
Putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
     
  0.577
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
     
  0.574
EFL22049.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
  
    0.573
EFL22047.1
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.572
EFL22051.1
Squalene-hopene cyclase.
       0.572
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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