Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL22518.1Anti-sigma factor, ChrR. (107 aa)    
Predicted Functional Partners:
EFL27959.1
Conserved hypothetical protein.
 
     0.644
EFL23172.1
ATP/GTP-binding protein.
 
 
 
 0.530
EFL25965.1
Hypothetical protein.
  
     0.517
EFL20659.1
RNA polymerase sigma-70 factor, family protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.508
EFL27108.1
LigA protein.
  
     0.498
EFL22519.1
Peptidase, S8A (subtilisin) subfamily; Belongs to the peptidase S8 family.
       0.486
EFL23628.1
Conserved hypothetical protein.
  
     0.486
EFL21274.1
Conserved hypothetical protein.
  
     0.474
EFL20299.1
Hypothetical protein.
   
 
 0.467
EFL20569.1
Putative RNA polymerase ECF-subfamily sigma factor.
   
 
 0.467
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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