STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22518.1Anti-sigma factor, ChrR. (107 aa)    
Predicted Functional Partners:
EFL27959.1
Conserved hypothetical protein.
 
     0.643
EFL23172.1
ATP/GTP-binding protein.
 
 
 0.623
EFL20659.1
RNA polymerase sigma-70 factor, family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.608
EFL25266.1
Cell surface glycoprotein 1 (Outer layer protein B) (S-layerprotein 1).
  
 
 0.573
EFL20299.1
Hypothetical protein.
  
 
 0.572
EFL20569.1
Putative RNA polymerase ECF-subfamily sigma factor.
  
 
 0.572
EFL20906.1
RNA polymerase sigma-70 factor.
  
 
 0.572
EFL21015.1
Putative RNA polymerase sigma (70) factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.572
EFL21266.1
TIGR02957 family RNA polymerase sigma-70 factor.
  
 
 0.572
EFL21927.1
Putative RNA polymerase ECF-subfamily sigma factor.
  
 
 0.572
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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