STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22907.1SMF protein. (399 aa)    
Predicted Functional Partners:
EFL22908.1
Mg chelatase-like protein.
 
 0.961
EFL22909.1
Conserved hypothetical protein; Belongs to the UPF0102 family.
 
    0.908
EFL22906.1
RNA polymerase sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.790
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
     
 0.790
EFL22913.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.773
EFL22915.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
 
     0.764
EFL22910.1
Putative CTP synthase (UTP-ammonia lyase).
       0.752
EFL22914.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
 
     0.747
EFL23551.1
Putative cysteine protease.
  
  
 0.745
EFL22905.1
Putative transcriptional regulator.
       0.737
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.