STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22908.1Mg chelatase-like protein. (540 aa)    
Predicted Functional Partners:
EFL22909.1
Conserved hypothetical protein; Belongs to the UPF0102 family.
 
  
 0.966
EFL22907.1
SMF protein.
 
 0.961
EFL22910.1
Putative CTP synthase (UTP-ammonia lyase).
       0.789
EFL22911.1
Putative MutT/nudix-family hydrolase; Belongs to the Nudix hydrolase family.
       0.760
EFL22912.1
Putative signal peptidase I; Belongs to the peptidase S26 family.
       0.760
EFL22906.1
RNA polymerase sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.752
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
   
 0.744
EFL22913.1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.718
EFL22905.1
Putative transcriptional regulator.
       0.713
EFL22919.1
Putative RNA-binding protein; Belongs to the UPF0109 family.
 
     0.712
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.