STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22909.1Conserved hypothetical protein; Belongs to the UPF0102 family. (119 aa)    
Predicted Functional Partners:
EFL22908.1
Mg chelatase-like protein.
 
  
 0.966
EFL22907.1
SMF protein.
 
    0.908
EFL22910.1
Putative CTP synthase (UTP-ammonia lyase).
       0.789
EFL22912.1
Putative signal peptidase I; Belongs to the peptidase S26 family.
  
    0.767
EFL22913.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
    0.764
EFL22911.1
Putative MutT/nudix-family hydrolase; Belongs to the Nudix hydrolase family.
       0.760
EFL22906.1
RNA polymerase sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.752
EFL22914.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
 
    0.723
EFL22915.1
Signal peptidase I; Overlaps another CDS with the same product name; Belongs to the peptidase S26 family.
 
    0.720
EFL22905.1
Putative transcriptional regulator.
       0.713
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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