STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL22993.1Pectate lyase (PL); Truncated CDS; unextendable partial coding region. (299 aa)    
Predicted Functional Partners:
EFL28952.1
Pectinesterase (Pectin methylesterase) (PE).
 
  
 0.937
EFL27100.1
Pectinesterase (Pectin methylesterase) (PE).
 
  
 0.935
EFL22992.1
Endoglucanase; Belongs to the glycosyl hydrolase family 6.
 
  
 0.897
EFL23090.1
Putative secreted lyase.
  
  
 0.888
EFL23091.1
Putative secreted lyase.
  
  
 0.885
EFL27104.1
Putative pectate lyase.
  
  
 0.856
EFL26420.1
Pectate lyase B.
 
  
 
0.798
EFL26282.1
Glycosyl hydrolase family 10.
  
  
 0.764
EFL23089.1
FG-GAP repeat domain protein.
  
  
 0.717
EFL21657.1
Endo-1,4-beta-xylanase A (Xylanase A) (1,4-beta-D-xylanohydrolase A).
  
     0.700
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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