Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL23028.1Putative toxin-antitoxin system, toxin component. (83 aa)    
Predicted Functional Partners:
EFL23027.1
Xre family toxin-antitoxin system, antitoxin component.
 
     0.802
EFL24449.1
Conserved hypothetical protein.
  
     0.649
EFL21663.1
LigA protein; Overlaps another CDS with the same product name.
  
     0.635
EFL24410.1
Conserved hypothetical protein.
  
     0.574
EFL23025.1
Lysine decarboxylase; Belongs to the LOG family.
       0.570
EFL23026.1
Conserved hypothetical protein.
       0.570
EFL28607.1
Hypothetical protein.
  
     0.537
EFL20925.1
Collagen alpha-1(III) chain.
  
     0.501
EFL20571.1
Putative large ATP-binding protein.
  
     0.477
EFL24263.1
Putative large ATP-binding protein.
  
     0.475
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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