STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23090.1Putative secreted lyase. (264 aa)    
Predicted Functional Partners:
EFL26420.1
Pectate lyase B.
 
  
 0.934
EFL26282.1
Glycosyl hydrolase family 10.
 
 0.933
EFL27103.1
Pectate lyase (PL).
  
  
 0.917
EFL28409.1
Putative pectinesterase/pectate lyase protein.
  
  
 0.908
EFL22993.1
Pectate lyase (PL); Truncated CDS; unextendable partial coding region.
  
  
 0.872
EFL28952.1
Pectinesterase (Pectin methylesterase) (PE).
  
  
 0.870
EFL27100.1
Pectinesterase (Pectin methylesterase) (PE).
  
  
 0.861
EFL23089.1
FG-GAP repeat domain protein.
 
  0.850
EFL28136.1
Feruloyl esterase B (Ferulic acid esterase B)(FAEB) (Cinnamoyl esterase).
 
  0.817
EFL27682.1
Endo-1,4-beta-xylanase A (Xylanase A) (1,4-beta-D-xylanohydrolase A).
  
 
 0.776
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.