Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EFL23107.1Putative RNA polymerase sigma (70) factor; Belongs to the sigma-70 factor family. ECF subfamily. (214 aa)    
Predicted Functional Partners:
EFL23106.1
Conserved hypothetical protein.
 
     0.850
EFL29177.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.764
EFL25456.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.758
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.724
EFL25354.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.709
EFL24254.1
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.703
EFL24805.1
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.683
EFL25711.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.683
EFL23108.1
TetR-family transcriptional regulator.
       0.570
EFL24083.1
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.558
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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