STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23316.1Signal peptidase. (144 aa)    
Predicted Functional Partners:
EFL23317.1
Superoxide dismutase, Ni.
 
   
 0.949
EFL25323.1
Putative membrane protein.
  
     0.541
EFL27207.1
Conserved hypothetical protein.
  
     0.541
EFL26194.1
Putative cytidine deaminase (Cytidine aminohydrolase) (CDA).
  
     0.537
EFL22224.1
Putative neuraminidase.
   
    0.489
EFL26656.1
Putative neuramidase; Truncated CDS; unextendable partial coding region.
   
    0.489
EFL24730.1
Putative regulator.
  
     0.466
EFL22241.1
Putative isomerase.
  
     0.460
EFL23388.1
UBA/THIF-type NAD/FAD binding fold protein; Truncated CDS.
 
     0.456
EFL26885.1
Putative membrane protein.
  
     0.455
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.