STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23336.1Anti-sigma factor (match). (137 aa)    
Predicted Functional Partners:
EFL23337.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
   0.990
EFL24825.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
   0.920
EFL25563.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
   0.912
EFL22316.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
   0.908
EFL25019.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
   0.907
EFL28795.1
Stress response/stationary phase sigma factor SigF; Belongs to the sigma-70 factor family.
 
   0.905
EFL27989.1
Stress response/stationary phase sigma factor SigF; Belongs to the sigma-70 factor family.
 
   0.903
EFL20645.1
Stress response/stationary phase sigma factor SigF; Belongs to the sigma-70 factor family.
 
   0.902
EFL24826.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
   0.896
EFL21037.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
   0.843
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.