STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23375.1Putative tetratricopeptide repeat protein. (609 aa)    
Predicted Functional Partners:
EFL27131.1
Conserved hypothetical protein.
 
 
   0.779
EFL27029.1
Conserved hypothetical protein.
 
 
   0.743
EFL23359.1
Putative tetratricopeptide repeat protein.
  
 
   0.729
EFL23377.1
Putative membrane protein.
       0.729
EFL24248.1
Alanine-rich protein.
  
     0.715
EFL25475.1
Putative integral membrane protein.
  
     0.705
EFL23167.1
Large Ala/Glu-rich protein.
  
     0.703
EFL24562.1
Putative membrane protein.
    
 0.693
EFL24645.1
Conserved hypothetical protein.
  
     0.693
EFL22810.1
Putative regulatory protein; Truncated CDS.
 
     0.682
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.