STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23453.1Putative acetyltransferase. (337 aa)    
Predicted Functional Partners:
EFL23454.1
Putative transcriptional regulator.
       0.890
EFL23589.1
Aspartate aminotransferase.
    
  0.889
EFL24093.1
Aspartate transaminase.
    
  0.889
EFL23452.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.815
EFL23451.1
Succinyldiaminopimelate transaminase.
    
  0.810
EFL22313.1
Conserved hypothetical protein.
    
  0.750
EFL28804.1
Aspartate aminotransferase.
    
  0.750
EFL24247.1
Conserved hypothetical protein; Unextendable partial coding region.
  
     0.639
EFL20426.1
Aminotransferase, classes I and II.
    
  0.583
EFL24872.1
Aspartate aminotransferase.
    
  0.583
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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