Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL23468.1Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (357 aa)    
Predicted Functional Partners:
EFL23466.1
Oligopeptide ABC transporter, permease.
 
 0.959
EFL28366.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein.
 
0.958
EFL28703.1
Putative transport system permease protein.
 
 0.956
EFL28050.1
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
0.955
EFL27425.1
Putative transport system permease protein.
 
 0.951
EFL23467.1
Oligopeptide transporter (ABC superfamily, atp_bind); Belongs to the ABC transporter superfamily.
 
 
0.943
EFL23478.1
Peptide ABC transporter, permease.
 0.928
EFL23464.1
Peptide ABC transporter, permease.
 0.927
EFL23488.1
Oligopeptide ABC transporter, permease OppC.
 
 0.927
EFL23489.1
Peptide ABC transporter, permease.
 
 0.910
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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