Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL23486.1Oligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (362 aa)    
Predicted Functional Partners:
EFL23488.1
Oligopeptide ABC transporter, permease OppC.
 
 0.969
EFL23489.1
Peptide ABC transporter, permease.
 
 0.963
EFL28366.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein.
 
0.957
EFL28050.1
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
0.954
EFL28703.1
Putative transport system permease protein.
 
 0.954
EFL27425.1
Putative transport system permease protein.
 
 0.950
EFL23478.1
Peptide ABC transporter, permease.
 0.933
EFL23479.1
Peptide ABC transporter, permease.
 
 0.920
EFL23487.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.899
EFL23464.1
Peptide ABC transporter, permease.
 0.874
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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