STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23502.1Regulatory protein GntR, HTH. (250 aa)    
Predicted Functional Partners:
EFL23501.1
Sensor histidine kinase/response regulator.
       0.747
EFL21377.1
Glycine dehydrogenase; Truncated CDS; Belongs to the GcvP family.
     
  0.647
EFL27304.1
Putative GntR-family transcriptional regulator; Unextendable partial coding region.
  
     0.613
EFL23499.1
MutT/NUDIX family protein; Belongs to the Nudix hydrolase family.
  
    0.576
EFL22046.1
LigA protein; Belongs to the serpin family.
       0.572
EFL23503.1
Aminopeptidase.
       0.523
EFL21604.1
Conserved hypothetical protein.
  
     0.520
EFL21964.1
Putative helix-turn-helix domain protein.
  
    0.498
EFL24961.1
Putative helix-turn-helix domain protein.
  
    0.498
EFL28115.1
AraC family transcriptional regulator.
   
  
 0.494
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.