STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23505.1Putative helix-turn-helix domain protein. (418 aa)    
Predicted Functional Partners:
EFL23504.1
Conserved hypothetical protein.
       0.780
EFL21911.1
Conserved hypothetical protein.
  
     0.742
EFL23509.1
Putative phosphotransferase enzyme family protein.
 
     0.720
EFL29471.1
LigA protein.
  
     0.691
EFL25739.1
Conserved hypothetical protein.
  
     0.664
EFL25227.1
Putative DNA-binding protein.
  
     0.611
EFL21236.1
PE-PGRS family protein.
  
  
  0.609
EFL25712.1
Conserved hypothetical protein.
  
    0.546
EFL29472.1
Putative protoporphyrinogen oxidase.
  
     0.536
EFL23508.1
Radical SAM.
 
     0.532
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.