STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23516.1LigA protein. (363 aa)    
Predicted Functional Partners:
EFL21916.1
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.640
EFL23515.1
N-acyl-D-amino-acid deacylase.
 
     0.637
EFL24122.1
Ferredoxin oxidoreductase, alpha subunit.
    
  0.632
EFL23514.1
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
 
     0.625
EFL23513.1
Asparaginase.
       0.554
EFL22484.1
Conserved hypothetical protein.
  
     0.522
EFL29344.1
Hypothetical protein.
  
     0.498
EFL20608.1
4-amino-4-deoxychorismate synthase, component I.
   
 
  0.487
EFL22263.1
Anthranilate synthase, phenazine specific.
   
 
  0.487
EFL26817.1
Anthranilate synthase, phenazine specific.
   
 
  0.487
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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