STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23538.1Penicillin-binding protein. (747 aa)    
Predicted Functional Partners:
EFL26868.1
Putative DivIVA domain protein.
   
 
 0.799
EFL22595.1
Putative penicillin-binding protein.
  
  
 
0.776
EFL23883.1
Putative D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.766
EFL25344.1
Serine-type D-Ala-D-Ala carboxypeptidase.
   
 
 0.766
EFL23718.1
Putative penicillin-binding protein.
 
 
 0.750
EFL26860.1
Cell division protein FtsW; Belongs to the SEDS family.
  
  
 0.750
EFL21700.1
Putative penicillin-binding protein.
 
 
 0.748
EFL26855.1
Penicillin binding protein transpeptidase domain protein.
 
 
0.744
EFL26141.1
Penicillin-binding protein 2.
 
 
 0.732
EFL26142.1
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
 
 
 0.722
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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