STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23541.1Putative transcriptional regulator, PadR family. (177 aa)    
Predicted Functional Partners:
EFL23543.1
Putative integral membrane protein.
 
   
 0.978
EFL23542.1
Lipoprotein releasing system, ATP-binding protein LolD.
 
   
 0.940
EFL22511.1
Putative secreted protein.
   
    0.886
EFL23539.1
SPFH domain/Band 7 family protein.
       0.801
EFL23540.1
Conserved hypothetical protein.
       0.801
EFL23538.1
Penicillin-binding protein.
     
 0.450
EFL26100.1
4-alpha-glucanotransferase.
       0.429
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.