Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL23560.1Type II/IV secretion system protein. (457 aa)    
Predicted Functional Partners:
EFL23558.1
Putative integral membrane protein.
 
 
 0.998
EFL23559.1
Putative integral membrane protein.
 
 
 0.998
EFL23562.1
Putative septum site-determining protein; Overlaps another CDS with the same product name.
 
 
 0.997
EFL23563.1
Flp pilus assembly protein CpaB.
 
 
 0.991
EFL24950.1
Putative integral membrane protein.
  
 
 0.960
EFL24951.1
Putative integral membrane protein.
  
 
 0.960
EFL23561.1
Putative septum site-determining protein; Overlaps another CDS with the same product name.
  
  
 0.951
EFL24949.1
Type II/IV secretion system protein.
     
  0.855
EFL23564.1
Conserved hypothetical protein.
       0.806
EFL23898.1
Putative tetratricopeptide repeat protein.
  
 
 0.804
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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