STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23589.1Aspartate aminotransferase. (403 aa)    
Predicted Functional Partners:
EFL23292.1
Oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
   
 0.915
EFL24122.1
Ferredoxin oxidoreductase, alpha subunit.
    
 0.913
EFL25093.1
Acetyltransferase, GNAT family protein.
  
  
 0.903
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.901
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
   
 
 0.899
EFL24002.1
Alanine racemase; Truncated CDS.
    
 0.896
EFL24404.1
Valine dehydrogenase (ValDH); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.896
EFL28253.1
Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.896
EFL28523.1
Ornithine cyclodeaminase/mu-crystallin; Truncated CDS.
    
 0.896
EFL24123.1
Putative oxidoreductase.
    
 0.895
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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