STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23656.1Putative helix-turn-helix domain protein. (142 aa)    
Predicted Functional Partners:
EFL23655.1
RelE family toxin-antitoxin system, toxin component.
 
   
 0.968
EFL24122.1
Ferredoxin oxidoreductase, alpha subunit.
    
  0.504
EFL23529.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.493
EFL27016.1
Putative DNA-binding transcriptional regulator.
   
    0.447
EFL24787.1
Putative hydrolase, NUDIX family.
  
  
  0.444
EFL25006.1
Putative toxin-antitoxin system, toxin component.
  
     0.442
EFL20680.1
Hypothetical protein.
   
    0.437
EFL21640.1
Putative transcriptional regulator.
   
    0.434
EFL22360.1
NAD-dependent deacetylase 2.
   
 
  0.433
EFL27741.1
Conserved hypothetical protein; Unextendable partial coding region.
   
 
  0.433
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.