STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL23742.1Regulatory protein, MerR. (249 aa)    
Predicted Functional Partners:
EFL23739.1
Short-chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.892
EFL23740.1
Alpha/beta hydrolase fold family hydrolase.
 
  
  0.839
EFL23741.1
Probable monooxygenase; Unextendable partial coding region.
 
     0.811
EFL24750.1
Short-chain dehydrogenase/reductase family oxidoreductase.
 
  
  0.798
EFL27277.1
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Truncated CDS.
   
  0.795
EFL26930.1
Glutamate synthase large subunit.
     
 0.717
EFL22809.1
Sensor histidine kinase/response regulator.
   
 0.670
EFL22249.1
Probable monooxygenase.
 
     0.663
EFL23272.1
Putative membrane protein.
 
     0.581
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.569
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.