Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL23846.1Phage tail sheath protein; Truncated CDS; unextendable partial coding region. (345 aa)    
Predicted Functional Partners:
EFL29126.1
Conserved hypothetical protein.
 
 
 0.990
EFL29131.1
NHL repeat domain protein.
 
 
 0.989
EFL23838.1
Putative tail lysozyme; Unextendable partial coding region.
 
 
 0.984
EFL29128.1
Putative tail lysozyme.
 
 
 0.984
EFL23840.1
Putative LysM domain protein.
 
 
 0.962
EFL29125.1
Peptidoglycan-binding LysM.
 
 
 0.962
EFL23837.1
Conserved hypothetical protein.
 
 
 0.952
EFL29129.1
Basic proline-rich protein.
 
 
 0.952
EFL29130.1
Putative LigA.
 
 
 0.951
EFL23851.1
Conserved hypothetical protein.
 
 
 
 0.949
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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