STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdH3-hydroxyacyl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (325 aa)    
Predicted Functional Partners:
EFL23860.1
Putative thioesterase.
  
 0.994
EFL21255.1
Probable 3-hydroxyacyl-CoA dehydrogenase protein.
  
 0.978
EFL23858.1
Conserved hypothetical protein.
 
  
 0.972
EFL23165.1
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.943
EFL25529.1
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.941
EFL21454.1
Nonspecific lipid-transfer protein.
  
 0.933
EFL26549.1
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.933
EFL26262.1
3-oxoadipyl-CoA thiolase.
 
 0.900
EFL21570.1
3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.889
EFL20674.1
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.873
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.