Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFL23877.1Outer membrane autotransporter barrel. (250 aa)    
Predicted Functional Partners:
EFL22046.1
LigA protein; Belongs to the serpin family.
    
 0.741
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.707
EFL21535.1
Putative thioredoxin.
    
 0.495
EFL21573.1
Thioredoxin.
    
 0.495
EFL24191.1
Putative Tat (twin-arginine translocation) domain protein.
    
 0.495
EFL24877.1
Non-specific serine/threonine protein kinase.
 
    0.429
EFL28265.1
Putative LigA.
   
 0.414
EFL22746.1
Trypsin (SET).
  
  
 0.409
EFL24562.1
Putative membrane protein.
    
 0.407
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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