STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24308.1Putative AmfC protein. (188 aa)    
Predicted Functional Partners:
EFL22906.1
RNA polymerase sigma factor WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 
 0.999
EFL24309.1
Conserved hypothetical protein.
 
     0.870
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
       0.796
EFL24825.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
  
 
 
 0.791
EFL20645.1
Stress response/stationary phase sigma factor SigF; Belongs to the sigma-70 factor family.
    
 
 0.763
EFL22316.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
    
 
 0.763
EFL23337.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
    
 
 0.763
EFL25019.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
    
 
 0.763
EFL25563.1
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
    
 
 0.763
EFL27473.1
Putative RNA polymerase sigma factor.
    
 
 0.763
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.