STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24392.1Prenyltransferase/squalene oxidase; Unextendable partial coding region. (368 aa)    
Predicted Functional Partners:
EFL22054.1
Squalene synthase HpnD.
  
 
 0.834
EFL22055.1
Squalene synthase HpnC.
  
 
 0.823
EFL27154.1
C-5 sterol desaturase (Sterol-C5-desaturase).
   
 0.819
EFL24391.1
Conserved hypothetical protein; Unextendable partial coding region.
  
 
 0.801
EFL23822.1
Putative NAD dependent epimerase/dehydratase family protein.
  
 
 0.622
EFL28731.1
Putative phosphopantetheine attachment site.
  
 
 0.575
EFL28740.1
Type I polyketide synthase AVES 2; Unextendable partial coding region.
  
 
 0.569
EFL22051.1
Squalene-hopene cyclase.
    
  0.507
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.496
EFL27328.1
Putative NTP pyrophosphohydrolase.
  
  
 0.496
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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