STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24408.1N-acetylgalactosamine-6-sulfate sulfatase; Truncated CDS; unextendable partial coding region. (318 aa)    
Predicted Functional Partners:
EFL27730.1
Sulfatase-modifying factor 1 (C-alpha-formyglycine-generating enzyme 1).
 
   0.828
EFL28823.1
Sulfatase-modifying factor 1 (C-alpha-formyglycine-generating enzyme 1).
 
   0.812
EFL21523.1
Alpha-galactosidase (Melibiase) (Alpha-D-galactoside galactohydrolase).
  
  
  0.807
EFL26656.1
Putative neuramidase; Truncated CDS; unextendable partial coding region.
    
 0.759
EFL22224.1
Putative neuraminidase.
  
 
 0.755
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.707
EFL27734.1
Putative sulfatase; Unextendable partial coding region.
 
     0.654
egtB
Sulfatase modifying factor; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family.
 
   0.640
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.588
EFL20376.1
Putative radical SAM domain protein.
  
 
 0.582
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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