STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24433.1Transcriptional regulator, TrmB. (183 aa)    
Predicted Functional Partners:
EFL24435.1
ABC transporter membrane-spanning protein.
 
     0.846
EFL24434.1
ABC transporter, ATP-binding protein.
 
     0.836
EFL27288.1
GntR family transcriptional regulator.
   
    0.463
EFL23098.1
Regulatory protein AfsR.
  
     0.449
EFL22547.1
Regulatory protein AfsR.
  
     0.444
EFL24603.1
Regulatory protein AfsR.
  
     0.430
EFL25599.1
Putative cupin domain protein.
  
     0.419
EFL28608.1
Regulatory protein AfsR.
  
     0.400
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.