STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24434.1ABC transporter, ATP-binding protein. (318 aa)    
Predicted Functional Partners:
EFL24435.1
ABC transporter membrane-spanning protein.
 
 
 0.989
EFL24433.1
Transcriptional regulator, TrmB.
 
     0.817
EFL24316.1
ABC transporter, permease.
 
 
 0.584
EFL25053.1
ABC-2 type transporter.
 
 
 0.545
EFL24882.1
ABC transporter, permease.
 
 
 0.528
EFL26664.1
ABC daunorubicin resistance transporter, transmembrane permease component.
 
 
 0.519
EFL26550.1
ABC transporter, permease.
 
 
 0.508
EFL20847.1
ABC transporter, permease.
 
 
 0.502
EFL25730.1
PTS system n-acetylglucosamine-specific EIICBA component.
 
      0.502
EFL23608.1
ABC transporter, permease component.
 
 
 0.495
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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