STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24507.1Riboflavin biosynthesis, RibD domain-containing protein. (187 aa)    
Predicted Functional Partners:
EFL27376.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.761
EFL23131.1
DNA-binding protein.
 
     0.566
EFL24506.1
Putative integral membrane protein.
       0.542
EFL24258.1
Glyoxalase.
 
    0.489
EFL22726.1
Thymidine kinase.
  
 
 0.454
EFL20894.1
Glyoxalase.
 
     0.452
EFL23129.1
Riboflavin biosynthesis, RibD domain-containing protein.
  
     0.451
EFL24839.1
Putative lactoylglutathione lyase.
 
    0.426
EFL28731.1
Putative phosphopantetheine attachment site.
    
 0.422
EFL28740.1
Type I polyketide synthase AVES 2; Unextendable partial coding region.
   
 
 0.420
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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