Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFL24689.1RNA polymerase sigma-70 factor, ECF subfamily. (229 aa)    
Predicted Functional Partners:
EFL24688.1
Putative membrane protein.
  
   0.914
EFL24690.1
Conserved hypothetical protein.
   
 
 0.857
EFL24687.1
Thioredoxin-disulfide reductase.
     
 0.801
EFL25354.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.793
EFL25671.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  
 0.792
EFL25711.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.778
EFL22232.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.774
EFL23979.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.765
EFL24686.1
Thioredoxin; Belongs to the thioredoxin family.
     
 0.758
EFL24805.1
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.724
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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