STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24696.1Transcriptional regulator, PadR family protein. (236 aa)    
Predicted Functional Partners:
EFL24694.1
Putative membrane protein.
 
   
 0.920
EFL24695.1
Inositol 1-phosphate synthase.
 
   
 0.902
EFL21837.1
Putative membrane protein.
  
     0.683
EFL24698.1
Putative integral membrane protein.
       0.655
EFL25627.1
Conserved hypothetical protein.
  
     0.512
EFL25208.1
Putative integral membrane protein.
  
     0.507
EFL27381.1
RecB family exonuclease.
  
     0.505
EFL24402.1
Conserved domain protein.
 
     0.491
whiB-2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.481
EFL22703.1
Nucleic acid binding, OB-fold, tRNA/helicase-type.
  
     0.461
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.