STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24758.1Putative secreted protein. (149 aa)    
Predicted Functional Partners:
EFL26045.1
Modular polyketide synthase.
 
  
 0.751
EFL20782.1
Modular polyketide synthase; Overlaps another CDS with the same product name; unextendable partial coding region.
    
 0.694
EFL20805.1
Modular polyketide synthase; Overlaps another CDS with the same product name.
    
 0.694
EFL23220.1
Beta-ketoacyl synthase.
    
 0.694
EFL20801.1
Modular polyketide synthase.
 
  
 0.673
EFL20784.1
Modular polyketide synthase.
 
  
 0.643
EFL20811.1
Modular polyketide synthase; Unextendable partial coding region.
 
  
 0.636
EFL28731.1
Putative phosphopantetheine attachment site.
 
  
 0.636
EFL21630.1
Non-ribosomal peptide synthetase.
    
 0.633
EFL20815.1
Modular polyketide synthase; Overlaps another CDS with the same product name.
 
  
 0.631
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.