STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24849.1Conserved hypothetical protein. (178 aa)    
Predicted Functional Partners:
tadA
Cytidine and deoxycytidylate deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.871
EFL22810.1
Putative regulatory protein; Truncated CDS.
  
     0.734
EFL24984.1
Putative anti-sigma factor.
  
     0.688
EFL21443.1
Conserved hypothetical protein; Unextendable partial coding region.
  
     0.680
EFL24990.1
Putative thymidylate kinase.
  
     0.673
EFL24825.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
     0.659
EFL24826.1
RNA polymerase sigma-F factor; Belongs to the sigma-70 factor family.
 
     0.658
EFL23426.1
Conserved hypothetical protein.
  
     0.656
EFL25254.1
Conserved hypothetical protein.
  
     0.642
EFL26885.1
Putative membrane protein.
  
     0.617
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.