STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24861.1Collagen alpha-1(II) chain (Alpha-1 type II collagen). (408 aa)    
Predicted Functional Partners:
EFL28466.1
Chorismate synthase.
 
     0.767
EFL21749.1
Conserved hypothetical protein.
  
     0.629
EFL28875.1
Regulatory protein.
  
     0.602
EFL20429.1
LigA protein; Truncated CDS.
  
     0.582
EFL24860.1
Amidase; Belongs to the amidase family.
       0.576
EFL28595.1
Regulatory protein.
  
     0.454
EFL26395.1
Conserved hypothetical protein; Truncated CDS.
  
     0.404
EFL27213.1
Putative regulatory protein.
  
     0.404
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.