STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFL24875.1LigA protein. (1773 aa)    
Predicted Functional Partners:
EFL24876.1
Mucin-2 (MUC-2) (Intestinal mucin-2).
 
     0.931
EFL20307.1
Putative WD-40 repeat protein.
  
     0.655
EFL24874.1
Conserved hypothetical protein.
       0.648
EFL29328.1
Putative WD-40 repeat protein.
  
     0.614
EFL26700.1
LigA protein.
  
     0.613
EFL20867.1
Mucin; Tracheobronchial mucin.
  
     0.564
EFL27520.1
Putative ATP/GTP binding protein.
  
     0.540
EFL23144.1
PE-PGRS family protein.
  
     0.506
EFL21323.1
LigA protein.
  
     0.504
EFL24873.1
Putative demethylmenaquinone methyltransferase.
       0.504
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.