STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL24949.1Type II/IV secretion system protein. (333 aa)    
Predicted Functional Partners:
EFL23558.1
Putative integral membrane protein.
 
  
 0.938
EFL23559.1
Putative integral membrane protein.
 
  
 0.926
EFL24948.1
Putative septum site determining protein.
       0.890
EFL24950.1
Putative integral membrane protein.
  
  
 0.881
EFL24951.1
Putative integral membrane protein.
  
  
 0.881
EFL23562.1
Putative septum site-determining protein; Overlaps another CDS with the same product name.
 
  
 0.838
EFL24344.1
Putative ATP/GTP-binding protein.
    
 0.616
EFL23563.1
Flp pilus assembly protein CpaB.
  
  
 0.591
EFL23759.1
Conserved hypothetical protein.
  
  
 0.575
EFL23561.1
Putative septum site-determining protein; Overlaps another CDS with the same product name.
  
  
 0.569
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.