STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFL25340.1Carboxysome peptide A; Belongs to the sigma-70 factor family. ECF subfamily. (307 aa)    
Predicted Functional Partners:
trpS-2
tryptophan-tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.797
EFL25114.1
Putative RNA polymerase sigma (70) factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.770
EFL25456.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.762
EFL29177.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.754
EFL25342.1
Putative 2',5' RNA ligase family protein.
       0.713
EFL22232.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.712
EFL25671.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.699
EFL25711.1
Putative RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.676
EFL24227.1
Conserved hypothetical protein.
   
   0.669
EFL26292.1
Putative RNA polymerase sigma (70) factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.637
Your Current Organism:
Streptomyces himastatinicus
NCBI taxonomy Id: 457427
Other names: S. himastatinicus ATCC 53653, Streptomyces himastatinicus ATCC 53653, Streptomyces himastatinicus str. ATCC 53653, Streptomyces himastatinicus strain ATCC 53653, Streptomyces hygroscopicus ATCC 53653
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.