Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFL21380.1 | EFL27383.1 | SSOG_01092 | SSOG_07097 | MerR family transcriptional regulator. | tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | 0.658 |
EFL21380.1 | rpoZ | SSOG_01092 | SSOG_01506 | MerR family transcriptional regulator. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.891 |
EFL22341.1 | EFL22692.1 | SSOG_02053 | SSOG_02406 | Conserved hypothetical protein. | Putative tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.518 |
EFL22341.1 | EFL27383.1 | SSOG_02053 | SSOG_07097 | Conserved hypothetical protein. | tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | 0.717 |
EFL22341.1 | rpmD | SSOG_02053 | SSOG_03768 | Conserved hypothetical protein. | Ribosomal protein L30. | 0.752 |
EFL22341.1 | rpoZ | SSOG_02053 | SSOG_01506 | Conserved hypothetical protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.865 |
EFL22341.1 | trmB | SSOG_02053 | SSOG_04066 | Conserved hypothetical protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.478 |
EFL22692.1 | EFL22341.1 | SSOG_02406 | SSOG_02053 | Putative tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Conserved hypothetical protein. | 0.518 |
EFL22692.1 | EFL27383.1 | SSOG_02406 | SSOG_07097 | Putative tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | 0.869 |
EFL22692.1 | trmB | SSOG_02406 | SSOG_04066 | Putative tRNA (Uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.642 |
EFL27380.1 | EFL27381.1 | SSOG_07094 | SSOG_07095 | Two-component system response regulator. | RecB family exonuclease. | 0.882 |
EFL27380.1 | EFL27382.1 | SSOG_07094 | SSOG_07096 | Two-component system response regulator. | Putative peptidase, M50 family; Belongs to the peptidase M50B family. | 0.813 |
EFL27380.1 | EFL27383.1 | SSOG_07094 | SSOG_07097 | Two-component system response regulator. | tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | 0.739 |
EFL27380.1 | EFL27384.1 | SSOG_07094 | SSOG_07098 | Two-component system response regulator. | Putative secreted protein. | 0.684 |
EFL27381.1 | EFL27380.1 | SSOG_07095 | SSOG_07094 | RecB family exonuclease. | Two-component system response regulator. | 0.882 |
EFL27381.1 | EFL27382.1 | SSOG_07095 | SSOG_07096 | RecB family exonuclease. | Putative peptidase, M50 family; Belongs to the peptidase M50B family. | 0.804 |
EFL27381.1 | EFL27383.1 | SSOG_07095 | SSOG_07097 | RecB family exonuclease. | tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. | 0.773 |
EFL27381.1 | EFL27384.1 | SSOG_07095 | SSOG_07098 | RecB family exonuclease. | Putative secreted protein. | 0.685 |
EFL27382.1 | EFL27380.1 | SSOG_07096 | SSOG_07094 | Putative peptidase, M50 family; Belongs to the peptidase M50B family. | Two-component system response regulator. | 0.813 |
EFL27382.1 | EFL27381.1 | SSOG_07096 | SSOG_07095 | Putative peptidase, M50 family; Belongs to the peptidase M50B family. | RecB family exonuclease. | 0.804 |
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