STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACB84775.1KEGG: hmo:HM1_2443 GatB/YqeY domain protein. (148 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: cbe:Cbei_2674 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.950
ACB84773.1
PFAM: histidine triad (HIT) protein; KEGG: tte:TTE0963 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase.
     
 0.593
ACB84777.1
KEGG: tpd:Teth39_1136 protein of unknown function DUF1432.
       0.567
ACB84776.1
PFAM: peptidase S14 ClpP; protein of unknown function DUF107; KEGG: bha:BH1356 hypothetical protein.
       0.517
ACB84769.1
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.473
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
 
     0.470
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
   
    0.470
ACB84772.1
Hypothetical protein.
       0.468
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
   
    0.414
ACB84771.1
Hypothetical protein.
       0.407
Your Current Organism:
Natranaerobius thermophilus
NCBI taxonomy Id: 457570
Other names: N. thermophilus JW/NM-WN-LF, Natranaerobius thermophilus JW/NM-WN-LF, Natranaerobius thermophilus str. JW/NM-WN-LF, Natranaerobius thermophilus strain JW/NM-WN-LF
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