STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACB86062.1PFAM: lipopolysaccharide biosynthesis protein; KEGG: mpe:MYPE6470 DNA topoisomerase IV subunit A. (522 aa)    
Predicted Functional Partners:
ACB86063.1
PFAM: lipopolysaccharide biosynthesis protein; KEGG: cne:CND01810 Dynactin.
      
0.773
ACB86064.1
PFAM: O-antigen polymerase; KEGG: swo:Swol_0127 hypothetical protein.
  
  
 0.628
ACB86065.1
Hypothetical protein.
       0.517
ACB86061.1
PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_2007 radical SAM domain protein.
       0.498
ACB86060.1
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dsy:DSY3347 hypothetical protein.
  
  
 0.415
Your Current Organism:
Natranaerobius thermophilus
NCBI taxonomy Id: 457570
Other names: N. thermophilus JW/NM-WN-LF, Natranaerobius thermophilus JW/NM-WN-LF, Natranaerobius thermophilus str. JW/NM-WN-LF, Natranaerobius thermophilus strain JW/NM-WN-LF
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